1.

RNA World Modeling: A Comparison of Two Complementary Approaches / Jarosław Synak (WIiT), Agnieszka Rybarczyk (WIiT), Jacek Błażewicz (WIiT) // Entropy - 2022, vol. 24, no. 4, p. 536-1-536-26

Scientific article 100.0 2.524

2.

Characterizing domain-specific open educational resources by linking ISCB Communities of Special Interest to Wikipedia / Alastair M. Kilpatrick, Farzana Rahman, Audra Anjum, Sayane Shome, K. M. Salim Andalib, Shrabonti Banik, Sanjana F. Chowdhury, Peter Coombe, Yesid Cuesta Astroz, J. Maxwell Douglas, Pradeep Eranti, Aleyna D. Kiran, Sachendra Kumar, Hyeri Lim, Valentina Lorenzi, Tiago Lubiana, Sakib Mahmud, Rafael Puche, Agnieszka Rybarczyk (WIiT), Syed Muktadir Al Sium, David Twesigomwe, Tomasz Żok (WIiT), Christine A. Orengo, Iddo Friedberg, Janet F. Kelso, Lonnie Welch // Bioinformatics - 2022, vol. 38, iss. Supplement_1, p. i19-i27

Scientific article 200.0 6.937

3.

Control of Cholesterol Metabolism Using a Systems Approach / Dorota Formanowicz, Marcin Radom (WIiT), Agnieszka Rybarczyk (WIiT), Krzysztof Tanaś (WIiT), Piotr Formanowicz (WIiT) // Biology - 2022, vol. 11, iss. 3, p. 430-1-430-33

Scientific article 100.0 5.079

4.

The itinerary of circulating miRNAs – implications for cancer progression and diagnosis / Przemysław Szałata, Anna-Maria Guner, Michalina Raczkowska, Julia Smyrek, Dominika Szaj, Katarzyna Samelak, Agnieszka Rybarczyk (WIiT), Tomasz P. Lehmann // Journal of Medical Science - 2021, vol. 90, no. 2, p. 97-110

Scientific article 20.0

5.

A Role of Inflammation and Immunity in Essential Hypertension - Modeled and Analyzed Using Petri Nets / Dorota Formanowicz, Agnieszka Rybarczyk (WIiT), Marcin Radom, Piotr Formanowicz (WIiT) // International Journal of Molecular Sciences - 2020, vol. 21, iss. 9, p. 3348-1-3348-34

Scientific article 140.0 5.924

6.

A Stochastic Petri Net-Based Model of the Involvement of Interleukin 18 in Atherosclerosis / Dorota Formanowicz, Agnieszka Rybarczyk (WIiT), Marcin Radom (WIiT), Krzysztof Tanaś, Piotr Formanowicz // International Journal of Molecular Sciences - 2020, vol. 21, iss. 22, p. 8574-1-8574-23

Scientific article 140.0 5.924

7.

Multi-agent approach to sequence structure simulation in the RNA World hypothesis / Jarosław Synak (WIiT), Agnieszka Rybarczyk (WIiT), Jacek Błażewicz (WIiT) // PLoS ONE - 2020, vol. 15, iss. 8, p. e0238253-1-e0238253-23

Scientific article 100.0 3.240

8.

RNAvista: a webserver to assess RNA secondary structures with non-canonical base pairs / Maciej Antczak (WI), Marcin Zabłocki (WI), Tomasz Żok (WI), Agnieszka Rybarczyk (WI), Jacek Błażewicz (WI), Marta Szachniuk (WI) // Bioinformatics - 2019, vol. 35, iss. 1, p. 152-155

Scientific article 200.0 5.610

9.

Factors Influencing Essential Hypertension and Cardiovascular Disease Modeled and Analyzed using Stochastic Petri Nets / Dorota Formanowicz, Agnieszka Rybarczyk (WI), Piotr Formanowicz (WI) // Fundamenta Informaticae - 2018, vol. 160, iss. 1-2, p. 143-165

Scientific article 20.0 1.204

10.

The role of Fenton reaction in ROS-induced toxicity underlying atherosclerosis - modeled and analyzed using a Petri net-based approach / Dorota Formanowicz, Marcin Radom (WI), Agnieszka Rybarczyk (WI), Piotr Formanowicz (WI) // BioSystems - 2018, vol. 165, p. 71-87

Scientific article 25.0 1.623

11.

Holmes: a graphical tool for development, simulation and analysis of Petri net based models of complex biological systems / Marcin Radom, Agnieszka Rybarczyk (WI), Bartłomiej Szawulak, Hubert Andrzejewski, Piotr Chabelski, Adam Kozak, Piotr Formanowicz (WI) // Bioinformatics - 2017, vol. 33, iss. 23, p. 3822-3823

Scientific article 45.0 5.481

12.

Modeling of the catalytic core of Arabidopsis thaliana Dicer-like 4 protein and its complex with double-stranded RNA / Agnieszka Mickiewicz, Joanna Sarzyńska, Maciej Miłostan (WI), Anna Kurzyńska-Kokorniak, Agnieszka Rybarczyk, Piotr Łukasiak (WI), Tadeusz Kuliński, Marek Figlerowicz, Jacek Błażewicz (WI) // Computational Biology and Chemistry - 2017, vol. 66, p. 44-56

Scientific article 25.0 1.412

13.

Tabu search for the RNA partial degradation problem / Agnieszka Rybarczyk (WI), Alain Hertz, Marta Kasprzak (WI), Jacek Błażewicz (WI) // International Journal of Applied Mathematics and Computer Science - 2017, vol. 27, no. 2, p. 401-415

Scientific article 25.0 1.694

14.

AmiRNA Designer - new method of artificial miRNA design / Agnieszka Mickiewicz, Agnieszka Rybarczyk, Joanna Sarzyńska, Marek Figlerowicz, Jacek Błażewicz (WI) // Acta Biochimica Polonica - 2016, vol. 63, no. 1, p. 71-77

Scientific article 15.0 1.159

15.

Computational prediction of non-enzymatic RNA degradation patterns / Agnieszka Rybarczyk (WI), Paulina Jackowiak, Marek Figlerowicz (WI), Jacek Błażewicz (WI) // Acta Biochimica Polonica - 2016, vol. 63, no. 4, p. 745-751

Scientific article 15.0 1.159

16.

RNA-Seq-based analysis of differential gene expression associated with hepatitis C virus infection in a cell culture / Anna Hojka-Osińska, Lucyna Budzko, Agnieszka Zmienko (WI), Agnieszka Rybarczyk (WI), Patrick Maillard, Agata Budkowska, Marek Figlerowicz, Paulina Jackowiak // Acta Biochimica Polonica - 2016, vol. 63, no. 4, p. 789-798

Scientific article 15.0 1.159

17.

New in silico approach to assessing RNA secondary structures with non-canonical base pairs / Agnieszka Rybarczyk, Natalia Szóstak, Maciej Antczak (WI), Tomasz Żok (WI), Mariusz Popenda, Ryszard Adamiak, Jacek Błażewicz (WI), Marta Szachniuk // BMC Bioinformatics - 2015, vol. 16, p. 276-1-276-12

Scientific article 35.0 2.435

18.

Sorting signal targeting mRNA into hepatic extracellular vesicles / Natalia Szóstak, Felix Royo, Agnieszka Rybarczyk (WI), Marta Szachniuk, Jacek Błażewicz, Antonio del Sol, Juan M. Falcon-Perez // RNA Biology - 2014, vol. 11, iss. 7, p. 836-844

Scientific article 35.0 4.974

19.

Cerberus: a new information retrieval tool for marine metagenomics / Marcin Radom, Renzo Kottmann, Agnieszka Rybarczyk, Piotr Formanowicz, Marta Szachniuk, Frank O. Glockner, Jacek Błażewicz // Foundations of Computing and Decision Sciences - 2010, vol. 35, no. 2, p. 107-126

Scientific article

20.

A comparison of group II introns of plastid tRNALysUUU genes encodingmaturase protein / K. Jankowiak, A. Pacak, Agnieszka Rybarczyk, Z. Szweykowska-Kulinska // Cellular & Molecular Biology Letters - 2004, vol. 9, iss. 2, p. 239-251

Scientific article 0.495