1.

Genome-scale de novo assembly using ALGA / Sylwester Swat (WIiT), Artur Laskowski (WIiT), Jan Badura (WIiT), Wojciech Frohmberg (WIiT), Paweł Wojciechowski, Aleksandra Świercz (WIiT), Marta Kasprzak (WIiT), Jacek Błażewicz (WIiT) // Bioinformatics - 2021, vol. 37, iss. 12, p. 1644-1651

Scientific article 200.0 6.931

2.

Antifungal agent 4-AN changes the genome-wide expression profile, downregulates virulence-associated genes and induces necrosis in Candida albicans cells / Aleksandra Martyna, Maciej Masłyk, Monika Janeczko, Elżbieta Kochanowicz, Bartłomiej Gielniewski, Aleksandra Świercz (WIiT), Oleg M Demchuk, Konrad Kubiński // Molecules - 2020, vol. 25, iss. 12, p. 2928-1-2928-11

Scientific article 100.0 4.411

3.

Characterization of RNP networks of PUM1 and PUM2 post-transcriptional regulators in TCam-2 cells, a human male germ cell model / Maciej J. Smialek, Erkut Ilaslan, Marcin P. Sajek, Aleksandra Świercz (WIiT), Damian M. Janecki, Kamila Kusz-Zamelczyk, Tomasz Wozniak, Maciej Kotecki, Luiza Handschuh, Marek Figlerowicz, Jadwiga Jaruzelska // Cells - 2020, vol. 9, no. 4, p. 984-1-984-23

Scientific article 140.0 6.600

4.

Transcriptome Remodeling in Gradual Development of Inverse Resistance between Paclitaxel and Cisplatin in Ovarian Cancer Cells / Jolanta Szenajch, Alicja Szabelska-Beręsewicz, Aleksandra Świercz (WIiT), Joanna Zyprych-Walczak, Idzi Siatkowski, Michał Góralski, Agnieszka Synowiec, Luiza Handschuh // International Journal of Molecular Sciences - 2020, vol. 21, iss. 23, p. 9218-1-9218-30

Scientific article 140.0 5.924

5.

Graph algorithms for DNA sequencing - origins, current models and the future / Jacek Błażewicz (WI), Marta Kasprzak (WI), Michał Kierzynka, Wojciech Frohmberg (WI), Aleksandra Świercz (WI), Paweł Wojciechowski, Piotr Żurkowski (WI) // European Journal of Operational Research - 2018, vol. 264, iss. 3, p. 799-812

Scientific article 40.0 3.806

6.

GRASShopPER - An algorithm for de novo assembly based on GPU alignments / Aleksandra Świercz (WI), Wojciech Frohmberg (WI), Michel Kierzynka (WI), Paweł Wojciechowski (WI), Piotr Żurkowski (WI), Jan Badura (WI), Artur Laskowski (WI), Marta Kasprzak, Jacek Błażewicz (WI) // PLoS ONE - 2018, vol. 13, iss. 8, p. e0202355-1-e0202355-23

Scientific article 40.0 2.776

7.

A gene expression microarray for Nicotiana benthamiana based on de novo transcriptome sequence assembly / Michał Góralski, Paula Sobieszczańska, Aleksandra Obrępalska-Stęplowska, Aleksandra Świercz (WI), Agnieszka Zmienko (WI), Marek Figlerowicz // Plant Methods - 2016, vol. 12, p. 1-10

Scientific article 40.0 3.510

8.

MTTE: an innovative strategy for the evaluation of targeted/exome enrichment efficiency / Katarzyna Klonowska, Luiza Handschuh, Aleksandra Świercz (WI), Marek Figlerowicz (WI), Piotr Kozłowski (WTCH) // Oncotarget - 2016, vol. 7, iss. 41, p. 67266-67276

Scientific article 40.0 5.168

9.

An Integrated Approach (CLuster Analysis Integration Method) to Combine Expression Data and Protein-Protein Interaction Networks in Agrigenomics: Application on Arabidopsis thaliana / Daniele Santoni, Aleksandra Świercz, Agnieszka Żmieńko, Marta Kasprzak (WI), Marek Błażewicz, Paola Bertolazzi, Giovanni Felici // OMICS: A Journal of Integrative Biology - 2014, vol. 18, iss. 2, p. 155-165

Scientific article 30.0 2.362

10.

Characterization of Sus scrofa Small Non-Coding RNAs Present in Both Female and Male Gonads / Dorota Kowalczykiewicz, Aleksandra Świercz (WI), Luiza Handschuh, Katarzyna Leśniak, Marek Figlerowicz, Jan Wrzesiński // PLoS ONE - 2014, 9(11), p. e113249

Scientific article 40.0 3.234

11.

Preprocessing and storing high-throughput sequencing data / Aleksandra Świercz, Bartosz Bosak, Marek Chłopkowski, Arkadiusz Hoffa, Marta Kasprzak (WI), Krzysztof Kurowski, Tomasz Piontek, Jacek Błażewicz (WI) // Computational Methods in Science and Technology - 2014, vol. 20 (1), p. 9-20

Scientific article 11.0

12.

Unified encoding for hyper-heuristics with application to bioinformatics / Aleksandra Świercz (WI), Edmund K. Burke, Mateusz Cicheński, Grzegorz Pawlak (WI), Sanja Petrovic, Tomasz Żurkowski, Jacek Błażewicz // Central European Journal of Operations Research - 2014, vol. 22, iss. 3, p. 567-589

Scientific article 20.0 0.832

13.

A hyper-heuristic approach to sequencing by hybridization of DNA sequences / Jacek Błażewicz (WI), Edmund K. Burke, Graham Kendall, Wojciech Mruczkiewicz (WI), Ceyda Oguz, Aleksandra Świercz // Annals of Operations Research - 2013, vol. 207, iss. 1, p. 27-41

Scientific article 30.0 1.103

14.

DNA sequence assembly involving an acyclic graph model / Jacek Błażewicz (WI), Wojciech Frohmberg (WI), Piotr Gawron (WI), Marta Kasprzak (WI), Michał Kierzynka (WI), Aleksandra Świercz (WI), Paweł Wojciechowski (WI) // Foundations of Computing and Decision Sciences - 2013, Vol. 38, no. 1, p. 25-34

Scientific article 15.0

15.

Dealing with repetitions in sequencing by hybridization / Jacek Błażewicz, V. Glover, Marta Kasprzak, Wojciech T. Markiewicz, Ceyda Oguz, D. Rebholz-Schumann, Aleksandra Świercz // Computational Biology and Chemistry - 2006, vol. 30, iss. 5, p. 313-320

Scientific article 2.135

16.

DNA sequencing by hybridization via genetic search / Jacek Błażewicz, Ceyda Oguz, Aleksandra Świercz, Jan Węglarz // Operations Research - 2006, vol. 54, no. 6, p. 1185-1192

Scientific article 1.234