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Mariusz Popenda

Articles | Reports | Doctoral supervisor of doctoral dissertations

1.

A new molecular mechanism of RNA circularization and the microRNA sponge formation / Agnieszka Belter, Mariusz Popenda, Marcin Sajek, Tomasz Woźniak, Mirosława Z. Naskręt-Barciszewska, Marta Szachniuk (WIiT), Stefan Jurga, Jan Barciszewski // Journal of Biomolecular Structure and Dynamics - 2022, vol. 40, no. 7, p. 3038-3045

Scientific article 70.0
2.

RNAspider: a webserver to analyze entanglements in RNA 3D structures / Kamil Luwański (WIiT), Vladyslav Hlushchenko (WIiT), Mariusz Popenda, Tomasz Żok (WIiT), Joanna Sarzyńska, Daniil Martsich (WIiT), Marta Szachniuk (WIiT), Maciej Antczak (WIiT) // Nucleic Acids Research - 2022, in press

Scientific article 200.0 16.971
3.

Entanglements of structure elements revealed in RNA 3D models / Mariusz Popenda, Tomasz Żok (WIiT), Joanna Sarzyńska, Agnieszka Korpeta, Ryszard W. Adamiak, Maciej Antczak, Marta Szachniuk (WIiT) // Nucleic Acids Research - 2021, vol. 49, iss. 17, p. 9625-9632

Scientific article 200.0 16.971
4.

ElTetrado: a tool for identification and classification of tetrads and quadruplexes / Tomasz Żok (WIiT), Mariusz Popenda, Marta Szachniuk (WIiT) // BMC Bioinformatics - 2020, vol. 21, p. 40-1-40-7

Scientific article 100.0 3.169
5.

New models and algorithms for RNA pseudoknot order assignment / Tomasz Żok (WIiT), Jan Badura (WIiT), Sylwester Swat (WIiT), Kacper Figurski, Mariusz Popenda, Maciej Antczak // International Journal of Applied Mathematics and Computer Science - 2020, vol. 30, no. 2, p. 315-324

Scientific article 100.0 1.417

All articles

1.

RNAspider: a webserver to analyze entanglements in RNA 3D structures / Kamil Luwański (WIiT), Vladyslav Hlushchenko (WIiT), Mariusz Popenda, Tomasz Żok (WIiT), Joanna Sarzyńska, Daniil Martsich (WIiT), Marta Szachniuk (WIiT), Maciej Antczak (WIiT) // r2894_2022

Research report
2.

Entanglements in RNA 3D structures / Marta Szachniuk (WIiT), Mariusz Popenda, Joanna Sarzyńska, Tomasz Żok (WIiT), Maciej Antczak (WIiT) // r2228_2021

Educational materials
3.

Entanglements of structure elements revealed in RNA 3D models / Mariusz Popenda, Tomasz Żok (WIiT), Joanna Sarzyńska, Agnieszka Korpeta, Ryszard W. Adamiak (WIiT), Maciej Antczak (WIiT), Marta Szachniuk (WIiT) // r1899_2021

Research report
4.

A new molecular mechanism of RNA circularization and the microRNA sponge formation / Agnieszka Belter, Mariusz Popenda, Marcin Sajek, Tomasz Woźniak, Miroslawa Z. Naskret-Barciszewska, Marta Szachniuk (WIiT), Stefan Jurga, Jan Barciszewski // r1417_2020

Research report
5.

RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers / Zhichao Miao, Ryszard Adamiak (WIiT), Maciej Antczak (WIiT), Michał J. Boniecki, Janusz M. Bujnicki, Shi-Jie Chen, Clarence Yu Cheng, Yi Cheng, Fang-Chieh Chou, Rhiju Das, Nikolay V. Dokholyan, Feng Ding, Caleb Geniesse, Yangwei Jiang, Astha Joshi, Andrey Krokhotin, Marcin Magnus, Olivier Mailhot, Francois Major, Thomas H. Mann, Paweł Piątkowski, Radoslaw Pluta, Mariusz Popenda, Joanna Sarzyńska, Lizhen Sun, Marta Szachniuk (WIiT), Siqi Tian, Jian Wang, Andrew M. Watkins, Jakub Wiedemann, Xiaojun Xu, Joseph D. Yesselman, Dong Zhang, Zhenzhen Zhang, Chenhan Zhao, Peinan Zhao, Yuanzhe Zhou, Tomasz Żok (WIiT), Adriana Żyła, Aiming Ren, Robert T. Batey, Barbara L. Golden, Lin Huang, David M. Lilley, Yijin Liu, Dinshaw J. Patel, Eric Westhof // r843_2020

Research report

All reports

1.

Algorithmic Aspects of RNA Structure Similarity Analysis / Tomasz Żok (WI) / prom. Marta Szachniuk (WI), Mariusz Popenda, rev. Paweł Górecki, Małgorzata Kotulska - Poznań, Polska, 2018 - 188 s.

Dissertation

All dissertations

System created by Poznań University of Technology and Poznan Supercomputing and Networking Center

Scientific Information System of the Poznań University of Technology

Person from outside the Poznań University of Technology

Mariusz Popenda

Articles (19)

Reports (8)

Doctoral supervisor of doctoral dissertations (1)