SIS PUT | prof. dr hab. inż. Marta Szachniuk

1.

RNAtive to recognize native-like structure in a set of RNA 3D models / Jan Pielesiak (WIiT), Maciej Antczak (WIiT), Marta Szachniuk (WIiT), Tomasz Żok (WIiT) // Bioinformatics - 2025, vol. 41, iss. 11

Scientific article 200
2.

Graph Neural Network and Diffusion Model for modeling RNA interatomic interactions / Marek Justyna (WIiT), Craig Zirbel, Maciej Antczak (WIiT), Marta Szachniuk (WIiT) // Bioinformatics - 2025, vol. 41, iss. 9, p. btaf515-1-btaf515-10

Scientific article 200
3.

Assessing interface accuracy in macromolecular complexes / Olgierd Ludwiczak (WIiT), Maciej Antczak (WIiT), Marta Szachniuk (WIiT) // PLoS ONE - 2025, vol. 20, iss. 4, p. e0319917-1-e0319917-7

Scientific article 100
4.

Detecting polynucleotide motifs: pentads, hexads, and beyond / Michał Żurkowski (WIiT), Maja Marusic, Dorota Gudanis-Sobocinska, Marta Szachniuk (WIiT) // PLoS Computational Biology - 2025, vol. 21, iss. 10, p. e1013633-1-e1013633-15

Scientific article 140
5.

RNA-Puzzles Round V: Blind predictions of 23 RNA structures / Fan Bu, Yagoub Adam, R. W. Adamiak (WIiT), Maciej Antczak (WIiT), Belisa Rebeca H. De Aquino, Nagendar Goud Badepally, Robert T. Batey, Eugene F. Baulin, Paweł Boiński (WIiT), Michal J. Boniecki, Janusz M. Bujnicki, Kristy A. Carpenter, Jose Chacon, Shi-Jie Chen, Wah Chiu, Pablo Cordero, Naba Krishna Das, Rhiju Das, Wayne K. Dawson, Frank Dimaio, Feng Ding, Anne-Catherine Dock-Bregeon, Nikolay V. Dokholyan, Ron O. Dror, Stanisław Dunin-Horkawicz, Stephan Eismann, Eric Ennifar, Reza Esmaeeli, Masoud Amiri Farsani, Adrian R. Ferré-D’amaré, Caleb Geniesse, George E. Ghanim, Horacio V. Guzman, Iris V. Hood, Lin Huang, Dharm Skandh Jain, Farhang Jaryani, Lei Jin, Astha Joshi, Masha Karelina, Jeffrey S. Kieft, Wipapat Kladwang, Sebastian Kmiecik, Deepak Koirala, Markus Kollmann, Rachael C. Kretsch, Mateusz Kruciński, Jun Li, Shuang Li, Marcin Magnus, Benoît Masquida, S. Naeim Moafinejad, Arup Mondal, Sunandan Mukherjee, Thi Hoang Duong Nguyen, Grigory Nikolaev, Chandran Nithin, Grace Nye, Iswarya P. N. Pandaranadar Jeyeram, Alberto Perez, Phillip Pham, Joseph A. Piccirilli, Smita Priyadarshini Pilla, Radosław Pluta, Simón Poblete, Almudena Ponce-Salvatierra, Mariusz Popenda, Lukasz Popenda, Fabrizio Pucci, Ramya Rangan, Angana Ray, Aiming Ren, Joanna Sarzynska, Congzhou Mike Sha, Filip Stefaniak, Zhaoming Su, Krishna C. Suddala, Marta Szachniuk (WIiT), Raphael Townshend, Robert J. Trachman Iii, Jian Wang, Wenkai Wang, Andrew Watkins, Tomasz K. Wirecki, Yi Xiao, Peng Xiong, Yiduo Xiong, Jianyi Yang, Joseph David Yesselman, Jinwei Zhang, Yi Zhang, Zhenzhen Zhang, Yuanzhe Zhou, Tomasz Żok (WIiT), Dong Zhang, Sicheng Zhang, Adriana Żyła, Eric Westhof, Zhichao Miao // Nature Methods - 2025, vol. 22, p. 399-411

Scientific article 200

All ARTICLES

1.

Automated RNA 3D Structure Prediction with RNAComposer / Marcin Biesiada (WI), Katarzyna J. Purzycka, Marta Szachniuk (WI), Jacek Błażewicz (WI), Ryszard Adamiak (WI) // W: RNA Structure Determination : Methods and Protocols / red. Douglas H. Turner, David H. Mathews - New York, United States : Springer, 2016 - p. 199-215

Chapter in monograph
2.

Turning data into folds using RNAComposer / Marta Szachniuk (WI), Joanna Sarzyńska, Jacek Błażewicz (WI) // W: 2013 International Symposium on Computational Models for Life Sciences, Sydney, Australia, 27-29 November, 2013 / red. Changming Sun: American Institute of Physics, 2013 - p. 353-354

Paper 15
3.

Evolutionary approach to NOE paths assignment in RNA structure elucidation / Jacek Błażewicz, Marta Szachniuk, Adam Wójtowicz // W: Proceedings of the 2004 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology: IEEE, 2004 - p. 206-213

Paper

All CHAPTERS

1.

4-wheel driving with ONQUADRO / Marta Szachniuk (WIiT), Mariusz Popenda, Joanna Sarzyńska, Tomasz Żok (WIiT) // r3805_2023

Educational materials
2.

Modeling 3D structures of RNA nanoparticles / Marta Szachniuk (WIiT), Joanna Sarzyńska, Maciej Antczak (WIiT), Mariusz Popenda, Tomasz Żok (WIiT) // r3330_2022

Research report
3.

RNAspider: a webserver to analyze entanglements in RNA 3D structures / Kamil Luwański (WIiT), Vladyslav Hlushchenko (WIiT), Mariusz Popenda, Tomasz Żok (WIiT), Joanna Sarzyńska, Daniil Martsich (WIiT), Marta Szachniuk (WIiT), Maciej Antczak (WIiT) // r2894_2022

Research report
4.

Entanglements in RNA 3D structures / Marta Szachniuk (WIiT), Mariusz Popenda, Joanna Sarzyńska, Tomasz Żok (WIiT), Maciej Antczak (WIiT) // r2228_2021

Educational materials
5.

Entanglements of structure elements revealed in RNA 3D models / Mariusz Popenda, Tomasz Żok (WIiT), Joanna Sarzyńska, Agnieszka Korpeta, Ryszard W. Adamiak (WIiT), Maciej Antczak (WIiT), Marta Szachniuk (WIiT) // r1899_2021

Research report

All REPORTS

1.

Combinatorial Analysis of 2D-NOESY Spectra in Nuclear Magnetic Resonance Spectroscopy of RNA Molecules / Marta Szachniuk / prom. Jacek Błażewicz, rev. Maciej Drozdowski, Adam Janiak, Wojciech Markiewicz - Poznań, Polska, 2005 - 115 s.

Dissertation

1.

Algorithms for feature exploration and modeling of quadruplex structures / Michał Żurkowski (WIiT) / prom. Marta Szachniuk (WIiT), rev. Witold Dyrka, Anna Kurzyńska-Kokorniak, Robert Nowak - Poznań, Polska, 2025 - 120 s.

Dissertation
2.

Bioinformatics methods of motif analysis in RNA structures / Joanna Miśkiewicz (WIiT) / prom. Marta Szachniuk (WIiT), rev. Anna Kurzyńska-Kokorniak, Szymon Wąsik - Poznań, Polska, 2022 - 182 s.

Dissertation
3.

Algorithmic Aspects of RNA Structure Similarity Analysis / Tomasz Żok (WI) / prom. Marta Szachniuk (WI), Mariusz Popenda, rev. Małgorzata Kotulska, Paweł Górecki - Poznań, Polska, 2018 - 188 s.

Dissertation

All DISSERTATIONS

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Employee

prof. dr hab. inż. Marta Szachniuk

Articles (62)

Chapters (3)

Reports (22)

Dissertation

Doctoral supervisor of doctoral dissertations (3)