SIS PUT | prof. dr hab. Ryszard Adamiak

1.

Computational Pipeline for Reference-Free Comparative Analysis of RNA 3D Structures Applied to SARS-CoV-2 UTR Models / Julita Gumna, Maciej Antczak (WIiT), Ryszard W. Adamiak (WIiT), Janusz M. Bujnicki, Shi-Jie Chen, Feng Ding, Pritha Ghosh, Jun Li, Sunandan Mukherjee, Chandran Nithin, Katarzyna Pachulska-Wieczorek, Almudena Ponce-Salvatierra, Mariusz Popenda, Joanna Sarzyńska, Tomasz Wirecki, Dong Zhang, Sicheng Zhang, Tomasz Żok (WIiT), Eric Westhof, Zhichao Miao, Marta Szachniuk (WIiT), Agnieszka Rybarczyk (WIiT) // International Journal of Molecular Sciences - 2022, vol. 23, iss. 17, p. 9630-1-9630-20

Scientific article 140 5,6
2.

Entanglements of structure elements revealed in RNA 3D models / Mariusz Popenda, Tomasz Żok (WIiT), Joanna Sarzyńska, Agnieszka Korpeta, Ryszard W. Adamiak, Maciej Antczak, Marta Szachniuk (WIiT) // Nucleic Acids Research - 2021, vol. 49, iss. 17, p. 9625-9632

Scientific article 200 19,16
3.

RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers / Zhichao Miao, Ryszard Adamiak, Maciej Antczak (WIiT), Michał Boniecki, Janusz M. Bujnicki, Shi-Jie Chen, Clarence Y. Cheng, Yi Cheng, Fang-Chieh Chou, Rhiju Das, Nikolay V. Dokholyan, Feng Ding, Caleb Geniesse, Yangwei Jiang, Astha Joshi, Andrey Krokhotin, Marcin Magnus, Olivier Mailhot, Francois Major, Thomas H. Mann, Paweł Piątkowski, Radosław Pluta, Mariusz Popenda, Joanna Sarzyńska, Lizhen Sun, Marta Szachniuk (WIiT), Sigi Tian, Jian Wang, Andrew M. Watkins, Jakub Wiedemann (WIiT), Xiaojun Xu, Joseph D. Yesselman, Dong Zhang, Zhenzhen Zhang, Chenhan Zhao, Peinan Zhao, Yuanzhe Zhou, Tomasz Żok (WIiT), Adriana Żyła, Aiming Ren, Robert T. Batey, Barbara L. Golden, Lin Huang, David M. Lilley, Yijin Liu, Dinshaw J. Patel, Eric Westhof // RNA - 2020, vol. 26, no. 12, p. 982-995

Scientific article 140 4,942
4.

New algorithms to represent complex pseudoknotted RNA structures in dot-bracket notation / Maciej Antczak (WI), Mariusz Popenda, Tomasz Żok (WI), Michał Żurkowski (WI), Ryszard W. Adamiak, Marta Szachniuk // Bioinformatics - 2018, vol. 34, iss. 8, p. 1304-1312

Scientific article 45 4,531
5.

RNAfitme: a webserver for modeling nucleobase and nucleoside residue conformation in fixed-backbone RNA structures / Maciej Antczak (WI), Tomasz Żok (WI), Maciej Osowiecki, Mariusz Popenda, Ryszard Adamiak (WI), Marta Szachniuk // BMC Bioinformatics - 2018, vol. 19, p. 1-11

Scientific article 35 2,511

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1.

Automated RNA 3D Structure Prediction with RNAComposer / Marcin Biesiada (WI), Katarzyna J. Purzycka, Marta Szachniuk (WI), Jacek Błażewicz (WI), Ryszard Adamiak (WI) // W: RNA Structure Determination : Methods and Protocols / red. Douglas H. Turner, David H. Mathews - New York, United States : Springer, 2016 - p. 199-215

Chapter in monograph

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1.

Entanglements of structure elements revealed in RNA 3D models / Mariusz Popenda, Tomasz Żok (WIiT), Joanna Sarzyńska, Agnieszka Korpeta, Ryszard W. Adamiak (WIiT), Maciej Antczak (WIiT), Marta Szachniuk (WIiT) // r1899_2021

Research report
2.

RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers / Zhichao Miao, Ryszard Adamiak (WIiT), Maciej Antczak (WIiT), Michał J. Boniecki, Janusz M. Bujnicki, Shi-Jie Chen, Clarence Yu Cheng, Yi Cheng, Fang-Chieh Chou, Rhiju Das, Nikolay V. Dokholyan, Feng Ding, Caleb Geniesse, Yangwei Jiang, Astha Joshi, Andrey Krokhotin, Marcin Magnus, Olivier Mailhot, Francois Major, Thomas H. Mann, Paweł Piątkowski, Radoslaw Pluta, Mariusz Popenda, Joanna Sarzyńska, Lizhen Sun, Marta Szachniuk (WIiT), Siqi Tian, Jian Wang, Andrew M. Watkins, Jakub Wiedemann, Xiaojun Xu, Joseph D. Yesselman, Dong Zhang, Zhenzhen Zhang, Chenhan Zhao, Peinan Zhao, Yuanzhe Zhou, Tomasz Żok (WIiT), Adriana Żyła, Aiming Ren, Robert T. Batey, Barbara L. Golden, Lin Huang, David M. Lilley, Yijin Liu, Dinshaw J. Patel, Eric Westhof // r843_2020

Research report
3.

RNAfitme:a webserver for modeling nucleobase and nucleoside residue confirmation in fixed-backbone RNA structures / Maciej Antczak (WI), Tomasz Żok (WI), Maciej Osowiecki, Mariusz Popenda, Ryszard W. Adamiak (WI), Marta Szachniuk // r545194_2018

Research report
4.

RNApdbee 2.0: multifunctional tool for RNA structure annotation / Tomasz Żok, Maciej Antczak (WI), Michał Żurkowski (WI), Mariusz Popenda, Jacek Błażewicz (WI), Ryszard W. Adamiak (WI), Marta Szachniuk (WI) // r527460_2018

Research report
5.

New algorithms to represent complex pseudoknotted RNA structures in dot-bracket notation / Maciej Antczak (WI), Mariusz Popenda, Tomasz Żok, Michał Żurkowski (WI), Marta Szachniuk (WI), Ryszard W. Adamiak (WI) // r521747_2017

Research report

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prof. dr hab. Ryszard Adamiak

Articles (15)

Chapters (1)

Reports (5)